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Bioinformatics for Beginners

Are you a biologist looking to expand your skills beyond the lab? Do you know how to code and want to learn bioinformatics? Here’s something for everyone: the Beginners in Bioinformatics Course! NEW: In addition to genomics, we now cover the latest technologies, including single-cell sequencing and spatial transcriptomics! We’ll provide not only the theory but also all the code you need. Finally, you’ll work on your own project, choosing a topic with our supervision. We offer a wide range of topics, including various omics, tumor imaging, and machine learning. You’re welcome to bring your own data! This course will help you quickly get started with bioinformatics, equipping you with the necessary skills and best practices, all tailored to your needs. These are skills you won’t find in ChatGPT! Don’t miss this opportunity to learn from expert scientists with years of teaching experience in bioinformatics.

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At a glance

Qualification:

Certificate of attendance "Bioinformatics for Beginners" (2 ECTS)

Start:

10.03.2025 17:30

Duration:

Costs:

CHF 1'150.00

Comment on costs: 

There is a discount for students. Contact us if you are interested.

Location: 

  • ZHAW Zürich, Building ZL, Lagerstrasse 41, 8004 Zürich  (Show on Google Maps)
  • close to Zürich main station

Language of instruction:

English

Dates: 

10.03.2025, 17:30 - 20:30

17.03.2025, 17:30 - 20:30

24.03.2025, 17:30 - 20:30

31.04.2025, 17:30 - 20:30

07.05.2025, 17:30 - 20:30

Objectives and content

Target audience

A six-weeks course for researchers who are starting with bioinformatics.

Prerequisites for this course: Although not required, familiarity with python or a coding language is recommended. Participants should bring laptops that have a working terminal.

Objectives

We’ll start by exploring the most used bioinformatics resources for a variety of different datasets, continue with hands-on exercises on genomics and transcriptomics. We’ll cover the best practices and common challenges in this practice as a foundation to the understanding of bioinformatics pipelines. In the last week of the course, you’ll work on projects. You’ll be able to choose projects on phylogenetics, immunobiology, cancer omics and images, single cell, spatial data, and machine learning. The majority of the course will be hands-on, allowing you to practice your acquired knowledge.

At the end, students will:

  • realize the wealth of bioinformatics database structures and omics tools
  • understand how to download and use data from bioinformatics databases
  • learn best practices and common challenges in genomics
  • explore downstream analysis approaches for bioinformatics datasets
  • work on a project to practice acquired knowledge on a topic of interest
  • work on datasets provided by real-life science researchers on phylogenetics, immunobiology, cancer omics and images, single cell, spatial data, and machine learning
  • present their findings

Content

Week 1: introduction to bioinformatics

Week 2: genomics

Week 3: spatial transcriptomics

Week 4: single cell sequencing

Week 5: project work

Week 6: project work

CAS in Digital Life Sciences

This module is part of the CAS in Digital Life Sciences continuing education programme, but can also be attended independently of the CAS.

More information here: CAS in Digital Life Sciences

Overview continuing education

You can find an overview of our continuing education programmes in the field of computational science and artificial intelligence here.

Methodology

The module will consist of lectures and practical exercises. In addition to lectures, students will be required to independently study selected topics. Students will work individually or in groups on chosen topics and present their results at the end of the course.

  • Exercises during the course: 50%
  • Project: 50%

The course is taught in English. We’ll be working with Python, Bash, R, etc., depending on the assignment. No prior knowledge of coding is required, although familiarity with a coding language will be helpful. Please bring laptops with a terminal installed. If you have any questions, feel free to email Tugce Bilgin.

More details about the implementation

There are six Monday evenings of classes. 

Enquiries and contact

  • Maria Anisimova is Professor of Computational Genomics, Head of Bioinformatics center at the Institute of Computational Life Sciences ZHAW and research group leader at the Swiss Institute of Bioinformatics.  She received her PhD in 2001 from University College London (UCL), United Kingdom. Her research group develops methods for analysing genomic sequences, including modelling the molecular evolution and adaptive change. Most recently her group focused on modelling the evolution of insertions, deletions and tandem repeats in genomic sequences, as well as using semantic web technologies for literature-based discovery in biomedical sciences.

  • Tugce Bilgin is an evolutionary biology researcher and lecturer. Before joining ZHAW, she was a lecturer at Columbia University in New York, USA. She holds a PhD in computational evolutionary biology from the University of Zurich and worked as a postdoctoral researcher in Switzerland for four years before moving to the US in 2018 to focus on teaching. Since then, Tugce has been teaching courses in bioinformatics, biostatistics, and data analysis. She also teaches creative coding for art in museums and yoga at a refugee center.

    Tugce is the founder and co-chair of the annually organized Evolutionary Genomics Summer School, a one-week workshop that has hosted more than 250 students over the past 10 years. She is passionate about making science more accessible to students and advancing pedagogical research. Tugce is part of the diversity group at the Swiss Institute of Bioinformatics and co-chair of the IDEA Taskforce at SMBE.

  • Feifei Xia is a third-year PhD student in professor Anisimova’s lab. She received her Master degree in data science from the University of Zurich in 2021 and worked as an intern at Empa St. Gallen for half a year before she joined the applied computational genomic group. Her research focuses on refining cancer classification and understanding cancer evolution with short tandem repeat variations in colorectal cancer. She built a dashboard to visualize and analyze the associations between short tandem repeat variations and gene expression data across different cancer subtypes.

  • Max Verbiest defended his thesis in the fall of 2024 in Maria Anisimova’s group and now works as a postdoctoral researcher. He studied biomedical sciences at the University of Amsterdam and holds a joint MSc degree in bioinformatics and systems biology from the University of Amsterdam and the Vrije Universiteit Amsterdam.

    Max joined Professor Anisimova's lab in 2020 as a PhD student. In his research, he investigates how variations in short tandem repeats—a specific type of repetitive genetic element—influence colorectal cancer. To achieve this, he integrates DNA and gene expression data to determine the functional effects of short tandem repeat mutations. This research can be combined with clinical patient information to link mutations to specific cancer phenotypes.

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10.03.2025 17:30 24.02.2025 Application