Kaufmann, Moritz; Schüle, Martin; Smits, Theo; Pothier, Joël,

2020.

Typing plasmids with distributed sequence representation [paper].

In:

Schilling, Frank-Peter; Stadelmann, Thilo, eds.,

Artificial Neural Networks in Pattern Recognition.

9th IAPR TC 3 Workshop on Artificial Neural Networks for Pattern Recognition (ANNPR'20), Winterthur, Switzerland, 2-4 September 2020.

Cham:

Springer.

pp. 200-210.

Lecture Notes in Computer Science ; 12294.

Available from: https://doi.org/10.1007/978-3-030-58309-5_16

Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F.,

2020.

Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis.

Microorganisms.

8(8), pp. 1253.

Available from: https://doi.org/10.3390/microorganisms8081253

Gétaz, Michael; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,

2020.

Comparative genomics of Xanthomonas fragariae and Xanthomonas arboricola pv. fragariae reveals intra- and interspecies variations.

Phytopathology Research.

2020(2), pp. 17.

Available from: https://doi.org/10.1186/s42483-020-00061-y

Escursell, Mireia Marcé; Roschi, Alexia; Smits, Theo; Rezzonico, Fabio,

2020.

Characterization and direct molecular discrimination of rpsL mutations leading to high streptomycin resistance in Erwinia amylovora.

Journal of Plant Pathology.

103(Suppl 1), pp. 99-108.

Available from: https://doi.org/10.1007/s42161-020-00600-8

Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, Stephanus N.; Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie L.; Carini, Paul; Chain, Patrick S. G.; Colman, Daniel R.; DeAngelis, Kristen M.; de los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J. G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Löffler, Frank E.; Makhalanyane, Thulani P.; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alió, Carlos; Probst, Alexander J.; Smits, Theo H.M.; Steen, Andrew D.; Steenkamp, Emma T.; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Hedlund, Brian P.; Reysenbach, Anna-Louise,

2020.

Roadmap for naming uncultivated archaea and bacteria.

Nature Microbiology.

5(8), pp. 987-994.

Available from: https://doi.org/10.1038/s41564-020-0733-x

Rothen, Julian; Sapugahawatte, Dulmini Nanayakkara; Li, Carmen; Lo, Norman; Vogel, Guido; Foucault, Frédéric; Pflüger, Valentin; Pothier, Joël; Blom, Jochen; Daubenberger, Claudia; Ip, Margaret,

2020.

A simple, rapid typing method for Streptococcus agalactiae based on ribosomal subunit proteins by MALDI-TOF MS.

Scientific Reports.

10(8788).

Available from: https://doi.org/10.1038/s41598-020-65707-5

Madhaiyan, Munusamy; Saravanan, Venkatakrishnan Sivaraj; Blom, Jochen; Smits, Theo; Rezzonico, Fabio; Kim, Soo-Jin; Weon, Hang-Yeon; Kwon, Soon-Wo; Whitman, William B.; Ji, Lianghui,

2020.

Phytobacter palmae sp. nov., a novel endophytic, N2 fixing, plant growth promoting Gammaproteobacterium isolated from oil palm (Elaeis guineensis Jacq.).

International Journal of Systematic and Evolutionary Microbiology.

70(2), pp. 841-848.

Available from: https://doi.org/10.1099/ijsem.0.003834

Fossou, Romain K.; Pothier, Joël F.; Zézé, Adolphe; Perret, Xavier,

2020.

Bradyrhizobium ivorense sp. nov. as a potential local bioinoculant for Cajanus cajan cultures in Côte d’Ivoire.

International Journal of Systematic and Evolutionary Microbiology.

70(2), pp. 1421-1430.

Available from: https://doi.org/10.1099/ijsem.0.003931

Oh, Woo Taek; Jun, Jin Woo; Giri, Sib Sankar; Yun, Saekil; Kim, Hyoun Joong; Kim, Sang Guen; Kim, Sang Wha; Kang, Jeong Woo; Han, Se Jin; Kwon, Jun; Kim, Ji Hyung; Smits, Theo H.M.; Park, Se Chang,

2019.

Pseudomonas tructae sp. nov., novel species isolated from rainbow trout kidney.

International Journal of Systematic and Evolutionary Microbiology.

69(12), pp. 3851-3856.

Available from: https://doi.org/10.1099/ijsem.0.003696

Schneeberger, Pierre H. H.; Fuhrimann, Samuel; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

2019.

Qualitative microbiome profiling along a wastewater system in Kampala, Uganda.

Scientific Reports.

9(1), pp. 17334.

Available from: https://doi.org/10.1038/s41598-019-53569-5

Smits, Theo H.M.,

2019.

The importance of genome sequence quality to microbial comparative genomics.

BMC Genomics.

20(662).

Available from: https://doi.org/10.1186/s12864-019-6014-5

Smits, Theo H.M.; Duffy, Brion; Blom, Jochen; Ishimaru, Carol A.; Stockwell, Virginia O.,

2019.

Pantocin A, a peptide-derived antibiotic involved in biological control by plant-associated Pantoea species.

Archives of Microbiology.

201(6), pp. 713-722.

Available from: https://doi.org/10.1007/s00203-019-01647-7

Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F.; Tonolla, Mauro,

2019.

Mixotrophic growth under micro-oxic conditions in the purple sulfur bacterium "Thiodictyon syntrophicum".

Frontiers in Microbiology.

10(384).

Available from: https://doi.org/10.3389/fmicb.2019.00384

Eck, Mathilde; Sare, Abdoul; Massart, Sébastien; Schmautz, Zala; Junge, Ranka; Smits, Theo H. M.; Jijakli, M.,

2019.

Exploring bacterial communities in aquaponic systems.

Water.

11(2), pp. 260.

Available from: https://doi.org/10.3390/w11020260

Palmisano, Marilena; Kopp, Max; Vincent, Michel; Thoss, Hagen; Werdenberg, Carole; Wohler, Christian,

2019.

Botrytis-Resistenzen auf Erdbeeren.

Schweizer Obst.

2019(1), pp. 37-40.

Available from: https://doi.org/10.21256/zhaw-19092

Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H.M.,

2019.

Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T.

Diversity.

2019(11), pp. 204.

Available from: https://doi.org/10.3390/d11110204

Ruinelli, Michela; Blom, Jochen; Smits, Theo; Pothier, Joël,

2019.

Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp.

BMC Genomics.

20(172).

Available from: https://doi.org/10.1186/s12864-019-5555-y

Luedin, Samuel; Liechti, Nicole; Cox, Raymond P.; Danza, Francesco; Frigaard, Niels-Ulrik; Posth, Nicole; Pothier, Joël F.; Roman, Samuele; Storelli, Nicola; Wittwer, Matthias; Tonolla, Mauro,

2019.

Draft genome sequence of Chromatium okenii isolated from the stratified alpine Lake Cadagno.

Scientific Reports.

9(1), pp. 1936.

Available from: https://doi.org/10.1038/s41598-018-38202-1

Michel, Vincent; Wohler, Christian; Kopp, Max; Thoss, Hagen; Mannale, Michael; Palmisano, Marilena,

2019.

Fungicide resistance of botrytis cinerea : first results from Switzerland [paper].

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IOBC-WPRS Bulletin Vol. 144.

9th International IOBC/WPRS Workshop on Integrated Plant Protection of soft fruits, Riga, Latvia, 5-7 September 2018.

ETH Zürich.

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Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.,

2019.

High-quality draft genome sequence of Pseudomonas reidholzensis strain CCOS 865T.

Microbiology Resource Announcements.

8(3).

Available from: https://doi.org/10.1128/MRA.01502-18