Gétaz, Michael; Bühlmann, Andreas; Schneeberger, Pierre H. H.; Van Malderghem, Cinzia; Duffy, Brion; Maes, Martine; Pothier, Joël F.; Cottyn, Bart,

2017.

A diagnostic tool for improved detection of Xanthomonas fragariae using a rapid and highly specific LAMP assay designed with comparative genomics.

Plant Pathology.

66(7), S. 1094-1102.

Verfügbar unter: https://doi.org/10.1111/ppa.12665

Frasson, David; Opoku, Michael; Picozzi, Tara; Torossi, Tania; Balada, Stefanie; Smits, Theo; Hilber, Urs,

2017.

Pseudomonas wadenswilerensis sp. nov. and Pseudomonas reidholzensis sp. nov. : two new species within the Pseudomonas putida group isolated from forest soil.

International Journal of Systematic and Evolutionary Microbiology.

67, S. 2853-2861.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.002035

Kamber, Tim; Pothier, Joël; Pelludat, Cosima; Rezzonico, Fabio; Duffy, Brion; Smits, Theo,

2017.

Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host.

BMC Genomics.

16(628), S. 1-12.

Verfügbar unter: https://doi.org/10.1186/s12864-017-4010-1

Gétaz, Michael; van der Wolf, Jan; Blom, Jochen; Pothier, Joël F.,

2017.

Complete genome sequences of three isolates of Xanthomonas fragariae, the bacterium responsible for angular leaf spots on strawberry plants.

Genome Announcements.

5(32).

Verfügbar unter: https://doi.org/10.1128/genomeA.00642-17

Ruinelli, Michela; Blom, Jochen; Pothier, Joël F.,

2017.

Complete genome sequence of Pseudomonas viridiflava CFBP 1590: isolated from diseased cherry in France.

Genome Announcements.

5(30).

Verfügbar unter: https://doi.org/10.1128/genomeA.00662-17

Rothen, Julian; Schindler, Tobias; Pothier, Joël F.; Younan, Mario; Certa, Ulrich; Daubenberger, Claudia; Pflüger, Valentin; Jores, Joerg,

2017.

Draft genome sequences of seven Streptococcus agalactiae strains isolated from Camelus dromedarius at the horn of Africa.

Genome Announcements.

5(28).

Verfügbar unter: https://doi.org/10.1128/genomeA.00525-17

Schneeberger, Pierre H.H.; Pothier, Joël F.; Bühlmann, Andreas; Duffy, Brion; Beuret, Christian; Utzinger, Jürg; Frey, Jürg E.,

2017.

Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection.

PLOS ONE.

12(5).

Verfügbar unter: https://doi.org/10.1371/journal.pone.0178195

Schmautz, Zala; Graber, Andreas; Jaenicke, Sebastian; Goesmann, Alexander; Junge, Ranka; Smits, Theo H. M.,

2017.

Microbial diversity in different compartments of an aquaponics system.

Archives of Microbiology.

199(4), S. 613-620.

Verfügbar unter: https://doi.org/10.1007/s00203-016-1334-1

Saponari, Maria; Gétaz, Michael; Palkovics, László; Kuzmanović, Nemanja; Puławska, Joanna; Ruinelli, Michela; Pothier, Joël; Obradović, Aleksa; Boscia, Donato; Végh, Anita; Kałużna, Monika,

2017.

Bacterial diseases

.

In:

Quero-García, José; Iezzoni, Amy; Puławska, Joanna; Lang, Gregory, Hrsg.,

Cherries : botany, production and uses.

Wallingford:

CAB International.

Palmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P.A.; Chan, Wai-Yin; van Zyl, Elritha; De Maayer, Pieter; Coutinho, Teresa A.; Blom, Jochen; Smits, Theo; Duffy, Brion; Venter, Stephanus N.,

2017.

Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella.

Antonie van Leeuwenhoek.

110(10), S. 1287-1309.

Verfügbar unter: https://doi.org/10.1007/s10482-017-0852-4

Kupferschmied, Peter; Chai, Tiancong; Flury, Pascale; Blom, Jochen; Smits, Theo; Maurhofer, Monika; Keel, Christoph,

2016.

Specific surface glycan decorations enable antimicrobial peptide resistance in plant-beneficial pseudomonads with insect-pathogenic properties.

Environmental Microbiology.

18(11), S. 4265-4281.

Verfügbar unter: https://doi.org/10.1111/1462-2920.13571

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry.

Systematic and Applied Microbiology.

39(6), S. 370-377.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.05.005

Ruinelli, Michela; Schneeberger, Pierre H.H; Ferrante, Patrizia; Bühlmann, Andreas; Scortichini, Marco; Vanneste, Joel L.; Duffy, Brion; Pothier, Joël F.,

2016.

Comparative genomics-informed design of two LAMP detection assays for detection of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae and discrimination of isolates belonging to the pandemic biovar 3.

Plant Pathology.

66(1), S. 140-149.

Verfügbar unter: https://doi.org/10.1111/ppa.12551

Schneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

2016.

Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire : a proof-of-concept study.

Infection, Genetics and Evolution.

40, S. 389-397.

Verfügbar unter: https://doi.org/10.1016/j.meegid.2015.08.044

Puławska, Joanna; Kuzmanović, Nemanja; Willems, Anne; Pothier, Joël F.,

2016.

Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks.

Systematic and Applied Microbiology.

39(3), S. 164-169.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.03.002

Rezzonico, Fabio; Smits, Theo; Born, Yannick; Blom, Jochen; Frey, Jürg E.; Goesmann, Alexander; Cleenwerck, Ilse; de Vos, Paul; Bonaterra, Anna; Duffy, Brion; Montesinos, Emilio,

2016.

Erwinia gerundensis sp. nov. : a cosmopolitan epiphyte originally isolated from pome fruit trees.

International Journal of Systematic and Evolutionary Microbiology.

66, S. 1583-1592.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.000920

Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion,

2016.

Fire blight disease reactome : RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infection.

Scientific Reports.

6(21600).

Verfügbar unter: https://doi.org/10.1038/srep21600

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Characterization and genetic diversity of causal agent of stone fruit bacterial canker Pseudomonas cerasi : a new pathogen of cherry [Paper].

In:

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts.

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, Izmir, Turkey, 21 April 2015.

International Society for Horticultural Science.

S. 9-14.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.2

Konavko, Dmitrijs; Malchev, Svetoslav; Pothier, Joël F.; Jundzis, Māris; Moročko-Bičevska, Inga; Rezzonico, Fabio,

2016.

Diversity and host range of Pseudomonas in fruit tree species in Latvia.

Acta Horticulturae.

1149, S. 25-30.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.5

Flury, Pascale; Aellen, Nora; Ruffner, Beat; Péchy-Tarr, Maria; Fataar, Shakira; Metla, Zane; Dominguez-Ferreras, Ana; Bloemberg, Guido; Frey, Joachim; Goesmann, Alexander; Raaijmakers, Jos M; Duffy, Brion; Höfte, Monica; Blom, Jochen; Smits, Theo; Keel, Christoph; Maurhofer, Monika,

2016.

Insect pathogenicity in plant-beneficial pseudomonads : phylogenetic distribution and comparative genomics.

ISME Journal: Multidisciplinary Journal of Microbial Ecology.

10, S. 2527-2542.

Verfügbar unter: https://doi.org/10.1038/ismej.2016.5